Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LUAD rs60415628 chr2:132246409 C/T 4.43E-6 502 21.75 24.13 11.33 KM Plot
LUAD rs62101232 chr18:77722454 T/C 1.53E-6 481 21.73 22.9 11.43 KM Plot
LUAD rs66478766 chr7:98915401 G/A 1.29E-6 504 21.13 26.13 9.7 KM Plot
LUAD rs66568021 chr7:98942989 C/T 1.29E-6 504 21.13 26.13 9.7 KM Plot
LUAD rs6673666 chr1:110273908 G/T 2.59E-5 484 21.77 22.2 15.92 KM Plot
LUAD rs6722515 chr2:10927737 A/G 4.1E-6 502 20.82 31.6 2.7 KM Plot
LUAD rs67546174 chr7:98938254 C/T 2.46E-10 502 21 25.9 9.32 KM Plot
LUAD rs67909852 chr7:98944926 T/C 1.29E-6 504 21.13 26.13 9.7 KM Plot
LUAD rs67934834 chr7:98899464 C/T 3.51E-6 502 21 25.9 9.32 KM Plot
LUAD rs6949195 chr7:158828069 G/T 2.86E-5 494 21.93 19.83 6.43 KM Plot
LUAD rs6964049 chr7:98923713 C/T 2.46E-10 502 21 25.9 9.32 KM Plot
LUAD rs7131126 chr11:62593595 G/A 2.27E-5 505 21.93 21.73 7.7 KM Plot
LUAD rs71574748 chr7:123159150 A/G 1.07E-5 499 21.87 22.47 12.53 KM Plot
LUAD rs7200011 chr16:55794768 C/A 2.66E-5 489 19.13 20.33 22.97 KM Plot
LUAD rs72188781 chr11:62627268 T/TA 2.46E-5 504 21.73 23.03 7.7 KM Plot